（最常用的一个）直译：You have misunderstood me.
其它：Don't get me wrong.别误会（我）。 You just got me wrong.
There is a misunderstanding between us.
There appears to have been a misunderstanding（between us）.
Maybe you have mistaken what I mean(or my meaning).
另外，misapprehend、misjudge也含有误会、误解之意。
You misunderstood me.
You are mistaken about me.
You have misunderstood me
you've misunderstood me
you've got me wrong
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